Automated Research

Automated scientific discovery, driven by autonomous AI research

From local optima to global insight, DeepScientist lets AI survey literature, run experiments, and draft publishable outputs in one continuous loop.

Survey / Experiment / Publish
Notebook / PDF / AutoFigure / Copilot, fully connected
Exploring Unknown Scientific Frontiers
Watercolor mountain
Local optimum
Local optimum
Midpoint
Midpoint
Global optimum
Global optimum
Explorer orb
Fog layerFog layerSeal
BarChart3
Local Optimum
Establish a reproducible baseline before pushing the frontier.
Baseline Value - 1.0xObservations - 24
Brain
Learn & Adapt
Accumulate experiments and notes to update strategy with evidence.
Experiment Cycles - 12Notes Linked - 86
SparklesIcon
Escape Local
Introduce new hypotheses and evidence to widen the search.
Exploration Radius - +32%New Hypotheses - 5
Crown
Global Optimum
Converge on the best result and ship reproducible outputs.
Insights - +17.3%Reproducibility - High
Autonomous Research Loop

From question to publishable evidence

Scroll to watch the CLI narrative evolve as each research step becomes concrete, reproducible, and ready to ship.

BookOpen
Step 1Map the landscape in minutes

Survey literature

Ingest PDFs, extract claims, and highlight contradictions before you design experiments.

PDF ingestionCitation mapClaim index
Braces
Step 2Turn hypotheses into runnable plans

Design experiments

Draft protocols, define controls, and pre-register the metrics before execution.

Hypothesis gridProtocol draftRisk notes
BarChart3
Step 3Measure, adapt, and accelerate

Run experiments

Launch runs, track live metrics, and widen exploration when gains plateau.

Queued runsLive metricsAuto notes
File
Step 4Draft, visualize, and export

Write and publish

Generate figures, assemble the manuscript, and export a reproducible package.

AutoFigureLaTeX exportRepro package
DeepScientist CLISession 01
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MODE remote SYNC connected USER guest
FOCUS SURVEY LITERATURE
# Autonomous research loop
Type /help for commands.
 
> /help
/login Login with token
/config Edit config
/resume Resume a session
/model Show or set model
 
> /resume
Session: protein-folding
Step 1/4 Literature survey
Sources indexed: 128
Contradictions flagged: 6
>|
Scroll to advance the CLI narrative
Research System

Every tool stays connected as the research evolves

Move between prompts, figures, and files without losing provenance. Each plugin updates the same research record.

Welcome + Copilot
Welcome + Copilot

Turn a question into a structured research plan

Start fast with guided prompts, then connect the dialogue to your sources and notes.

  • Guided prompts for concept, literature, and experiments
  • Drag and drop PDFs, notebooks, or data tables
  • Jump back into pinned threads with full context
Quick promptslive
> Summarize contradictions in CRISPR papers
12 evidence links added
ConceptLiteratureExperimentAnalysis
AutoFigure
AutoFigure

AutoFigure turns papers into editable scientific visuals

Import a paper, draft a layout, iterate with AI, then render and export.

  • Draft, iterate, and render in a single workflow
  • Multiple iterations with a clean final export
  • Saved to the project file tree automatically
AutoFigure pipeline
Draft
Layout
Iterate
Refine
Render
Export
Projects / Workspace
Projects / Workspace

One project holds the full research system

Notebook, PDF, LaTeX, code, and collaboration stay unified from start to finish.

  • Unified file tree
  • Multi-plugin workflow (Notebook / AutoFigure / PDF / Copilot)
  • Shareable and reproducible by default
Live workspacesynced
Filenotebook.md
Databasesources.bib
FolderIconfigures/
> export arxiv-ready.zip
Ready to run the loop

Launch a new experiment today

Start in seconds, then connect the CLI, workspace, and AutoFigure outputs as your research evolves.